This Healthy Pumpkin Muffins recipe is made with whole grains, less butter and sugar, and only 160 calories each! They taste just like the bakery and are freezer friendly!
Looking for more pumpkin recipes? Try my Pumpkin Chocolate Chip Bread, Classic Pumpkin Roll, Pumpkin Bars with Caramel Frosting, or Pumpkin French Toast!
What I love about them:
- Healthy, but just as good as a bakery – I love that these have less sugar and fat than regular pumpkin muffins, but they still taste like a sweet treat and I can feel comfortable offering them to my kids.
- Freezer Friendly – Make a double batch and freeze the leftovers for a quick snack, or for part of kids lunches.
- Add protein: Make them even healthier by replacing a few tablespoons of the flour with a scoop of protein powder!
How to make Healthy Pumpkin Muffins:
Combine dry ingredients: flour, cornstarch, pumpkin spice, baking soda, baking powder, and salt.
Mix wet ingredients in a separate bowl: eggs, honey, butter, and canned pumpkin puree (or homemade pumpkin puree). Make a well in the center of the dry ingredients then pour the wet mixture in.
Stir batter together, being careful not to over-mix it, and then add chocolate chips (optional). Divide batter between the muffin cups.
Bake healthy pumpkin muffins at 350 degrees F for about 15-20 minutes. Enjoy!
Freezing Instructions:
To Freeze: Allow healthy pumpkin muffins to cool completely, then place them in a freezer safe container and freeze for up to 3 months.
More Healthy Muffin Recipes:
- Healthy Applesauce Oat Muffins
- Healthy Banana Bread Muffins
- Skinny Chocolate Muffins
- Banana Oat Muffins
- Bran Muffins
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Recipe
Healthy Pumpkin Muffins
Equipment
Ingredients
- 1 1/4 cups whole-wheat flour
- 1/4 cup cornstarch*
- 1 Tablespoon pumpkin pie spice
- 1 teaspoon baking soda
- ¼ teaspoon baking powder
- ½ teaspoon salt
- 2 large eggs
- 1/2 cup honey
- 1/3 cup melted butter , or coconut butter
- 1 cup canned pumpkin puree
- 1/2 cup semi-sweet chocolate chips , optional
Instructions
- Preheat the oven to 350 degrees F. Spray a standard 12-cup muffin tin with non-stick cooking spray (or line with muffin liners).
- Whisk dry ingredients together: flour, cornstarch, pumpkin spice, baking soda, baking powder, and salt.
- Mix wet ingredients together: eggs, melted butter, honey, and pumpkin puree.
- Make a well in the center of the flour mixture and add the pumpkin mixture and chocolate chips. Mix just until combined. (Do not over-mix).
- Spoon the batter into the muffin pan, filling each cup 2/3 full (or a little more if you want bigger muffins). Bake for 16 – 18 minutes or until a toothpick inserted comes out clean. .
Notes
Nutrition
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Recipe inspired by 100 Days of Real Food.
I originally shared this recipe October 2015. Updated September 2018, October 2021 and September 2023.
This post contains affiliate links.
Hello! I want to try this but was wondering if I could double or triple it? I like to make big batches and freeze them. Thank you so much for your delicious recipes! I recently discovered your website and new cookbook.
Yes! There is a button to double or triple the recipe ingredients in the recipe card. Thanks for the support. We love you!
Made these with AP flour, they were super good but were a bit dry. Any recommendations on how to make these more moist?
Thanks
Make sure to measure the flour properly–they may have had too much flour, if they were dry.
I have now brought this dessert to back-to-back friend gatherings and it was a hit at both! It is so easy to make and is honestly the best apple crisp I have had. Served with a scoop of vanilla ice cream…yum!!
One of my girlfriends recently brought these to a get together and they were the first thing gone. Everyone was asking for the recipe and she shared that she got the recipe from your site. I will definitely be making these soon – they were amazing!
I made this today with my Kindergarten class. We had to make some changes due to allergies. We used flax eggs and applesauce instead of melted butter. They turned out so moist and delicious! And completely vegan!
If I use AP flour, do I still need to use cornstarch? thank you 🙂
You don’t have to use the cornstarch (you could replace it 1:1 for flour).
Can I sub applesauce for butter in this recipe? If so, how much? Thank you!
Sure–I’d add 1/3 cup.
These came out so moist and delicious! I didn’t have any chocolate chips on hand so added a bit of cream cheese extract instead to add a little extra kick. I’ll definitely be making these again, hopefully with chocolate chips!
I was looking for a pumpkin muffin recipe with whole wheat flour. This one intrigued me but I agree with what other reviews said-the texture was gritty. Sorry.
I was wondering if I could substitute banana for the pumpkin, keeping everything else the same? They sound delicious with the pumpkin, but I have some bananas I need to use up. These really look wonderful.
Hi Kathy, that would be fine, but I’d recommend my Skinny Banana Muffins recipe instead: https://tastesbetterfromscratch.com/skinny-banana-bread-muffins/