These healthy Chocolate Muffins are DELICIOUS and completely guilt-free, made with whole grains and only 150 calories each!

Just like so many of my other favorite muffin recipes, these freeze wonderfully for an easy and quick breakfast or snack.
Healthy Chocolate Muffins stacked on a plate with a bite taken out of one, showing the inside muffin crumb..

These skinny chocolate muffins are way healthier than any store bought chocolate muffin but they still have the same great flavor and texture. I call that a major WIN!

How to make Healthy Chocolate Muffins:

  • Preheat oven to 350 degrees F. Grease a standard 12 cup muffin tin with non-stick cooking spray.
  • In a large bowl, combine the dry ingredients: flours, sugar, cocoa, baking soda, cinnamon, salt and chocolate chips and stir to combine.
  • In a medium bowl, beat together the eggs, yogurt, milk, applesauce and vanilla. Make a well in the center of the dry ingredients and stir in the wet mixture, stirring just until moistened (don't over-mix).

Three process photos for making the batter for chocolate muffins, in a mixing bowl.

  • Divide batter between muffin cups. Bake for 12-15 minutes or until a toothpick inserted in the center comes out clean. Remove to a wire rack to cool completely.

Chocolate muffin batter in a muffin tin next to another photo of the baked muffins on a plate.

Freezing Instructions: Allow muffins to cool completely. Store them in a freezer-safe ziplock bag or air-tight container.

Consider trying healthy snacks:

Skinny Banana Bread Muffins

Energy Bites

Easy Homemade Applesauce

Healthy Granola

Healthy Frozen Yogurt

 FOLLOW ME on FACEBOOKTWITTERINSTAGRAM and PINTEREST for more great recipes!

Recipe

Healthy Chocolate Muffins stacked on a plate with a bite taken out of one.
Prep 10 minutes
Cook 15 minutes
Total 25 minutes
Save Recipe

Ingredients
  

Instructions
 

  • Preheat oven to 350 degrees F. Grease a standard 12 cup muffin tin with non-stick cooking spray.
  • In a large bowl, combine the dry ingredients: flours, sugar, cocoa, baking soda, cinnamon, salt and chocolate chips and stir to combine.
  • In a medium bowl, beat together the eggs, yogurt, milk, applesauce and vanilla. Make a well in the center of the dry ingredients and stir in the wet mixture, stirring just until moistened (don't over-mix).
  • Divide batter between muffin cups. Bake for 12-15 minutes or until a toothpick inserted in the center comes out clean. Remove to a wire rack to cool completely.

Notes

Freezing Instructions: Allow muffins to cool completely. Store them in a freezer-safe ziplock bag or air-tight container.

Nutrition

Calories: 153kcalCarbohydrates: 23gProtein: 5gFat: 5gSaturated Fat: 3gCholesterol: 33mgSodium: 162mgPotassium: 147mgFiber: 2gSugar: 11gVitamin A: 65IUCalcium: 39mgIron: 2mg

Check out my webstory.

Have you tried this recipe?!

RATE and COMMENT below! I would love to hear your experience.

I originally shared this recipe September 2017. Updated January 2020.

This post contains affiliate links.

Related Posts

Share Recipe

About The Author

Lauren Allen

Welcome! I’m Lauren, a mom of four and lover of good food. Here you’ll find easy recipes and weeknight meal ideas made with real ingredients, with step-by-step photos and videos.

4.1 8 votes
Recipe Rating
4.94 from 130 votes (95 ratings without comment)
Subscribe
Notify of
guest

90 Comments
Inline Feedbacks
View all comments
sheila unrau
7 years ago

Sounds yummy, how can I add more protein and fiber to these muffings

Jessica
7 years ago

5 stars
Super delicious and moist. Thank you for the recipe!

Haley
7 years ago

Any idea if you can make these as mini muffins? Cook time?

Andrea
7 years ago

5 stars
Loved these muffins! Thanks for the recipe!

Mary Gutierrez
7 years ago

5 stars
Made these for breakfast and they really hit the spot. Delicious and moist. Am not a chocoholic by any stretch but when i do crave it I Really want something with good chocolate flavor, this hit the mark. Was just wondering if your nutrition info is for the full fat yogurt and milk and for using canola oil.

Sharon Peelow
8 years ago

5 stars
Delicious! Thanks Lauren!

Nathalie
9 years ago

I made these today and so happy to have found a healthy double chocolate muffin recipe! They are perfect!

Aubri
9 years ago

I made these for an after school treat today. They were fabulous! Perfectly sweet (not too sweet!) and chocolatey! My kids devoured them. Next time I’ll have to double it! Thanks for the recipe!

Renata
9 years ago

I’ve baked these and love the taste, the fluffiness and texture! 10/10! Check it out! https://www.instagram.com/p/BAz3exzksWg/

Lyn
2 years ago
Reply to  Renata

5 stars
Love the texture of these muffins and will make again. I was not keen on the banana in there though. I felt it took over the chocolate taste a little. It would though help keep them moist. What would be a good substitute for the banana?

Anita
10 years ago

Made these muffins this morning for my 3 teens as a Sunday morning treat. We all loved them. Substituted coconut oil for canola. Thanks for sharing this recipe! 🙂
Delicious!